Protein Structure Prediction 2nd Edition by Mohammed Zaki, Christopher Bystroff ISBN 978-1597455749 1597455749
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Product details:
ISBN 10: 1597455749
ISBN 13: 978-1597455749
Author: Mohammed J. Zaki, Christopher Bystroff
This book covers elements of both the data-driven comparative modeling approach to structure prediction and also recent attempts to simulate folding using explicit or simplified models. Despite the unsolved mystery of how a protein folds, advances are being made in predicting the interactions of proteins with other molecules, such as small ligands, nucleic acids or other proteins. Also rapidly advancing are the methods for solving the inverse folding problem, the problem of finding a sequence to fit a structure. This book focuses on the various computational methods for prediction, their successes and their limitations, from the perspective of their most well known practitioners.
Table of contents:
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Overview of Protein Structure Prediction
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A Historical Perspective of Template-Based Protein Structure Prediction
Jun-tao Guo, Kyle Ellrott, Ying Xu -
The Assessment of Methods for Protein Structure Prediction
Anna Tramontano, Domenico Cozzetto, Alejandro Giorgetti, Domenico Raimondo -
Template-Based Methods
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Aligning Sequences to Structures
Liam James McGuffin -
Protein Structure Prediction Using Threading
Jinbo Xu, Feng Jiao, Libo Yu -
Structure Alignment and Indexing
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Algorithms for Multiple Protein Structure Alignment and Structure-Derived Multiple Sequence Alignment
Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson -
Indexing Protein Structures Using Suffix Trees
Feng Gao, Mohammed J. Zaki -
Protein Features Prediction
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Hidden Markov Models for Prediction of Protein Features
Christopher Bystroff, Anders Krogh -
The Pros and Cons of Predicting Protein Contact Maps
Lisa Bartoli, Emidio Capriotti, Piero Fariselli, Pier Luigi Martelli, Rita Casadio -
Roadmap Methods for Protein Folding
Mark Moll, David Schwarz, Lydia E. Kavraki -
Methods for de novo Structure Prediction
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Scoring Functions for De Novo Protein Structure Prediction Revisited
Shing-Chung Ngan, Ling-Hong Hung, Tianyun Liu, Ram Samudrala -
Protein–Protein Docking: Overview and Performance Analysis
Kevin Wiehe, Matthew W. Peterson, Brian Pierce, Julian Mintseris, Zhiping Weng -
Molecular Dynamics Simulations of Protein Folding
Angel E. Garcia
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Tags: Mohammed Zaki, Christopher Bystroff, Protein Structure Prediction