Python for Bioinformatics Chapman and Hall CRC Mathematical and Computational Biology 1st Edition by Sebastian Bassi ISBN 1584889292 9781584889298

Python for Bioinformatics (Chapman & Hall/CRC Mathematical and Computational Biology) 1st Edition by Sebastian Bassi – Ebook PDF Instant Download/Delivery: 1584889292, 978-1584889298

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Product details:

ISBN 10: 1584889292

ISBN 13: 978-1584889298

Author:  Sebastian Bassi 

Python for Bioinformatics (Chapman & Hall/CRC Mathematical and Computational Biology) 1st Edition: 

Programming knowledge is often necessary for finding a solution to a biological problem. Based on the author’s experience working for an agricultural biotechnology company, Python for Bioinformatics helps scientists solve their biological problems by helping them understand the basics of programming. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language.

The book begins with a very basic introduction that teaches the principles of programming. It then introduces the Biopython package, which can be useful in solving life science problems. The next section covers sophisticated tools for bioinformatics, including relational database management systems and XML. The last part illustrates applications with source code, such as sequence manipulation, filtering vector contamination, calculating DNA melting temperature, parsing a genbank file, inferring splicing sites, and more. The appendices provide a wealth of supplementary information, including instructions for installing Python and Biopython and a Python language and style guide.

By incorporating examples in biology as well as code fragments throughout, the author places a special emphasis on practice, encouraging readers to experiment with the code. He shows how to use Python and the Biopython package for building web applications, genomic annotation, data manipulation, and countless other applications.

 

Python for Bioinformatics (Chapman & Hall/CRC Mathematical and Computational Biology) 1st Edition Table of contents:

Section I 
Programming

• Chapter 1
  Introduction

• Chapter 2
  First Steps with Python

• Chapter 3
  Basic Programming: Data Types

• Chapter 4
  Programming: Flow Control

• Chapter 5
  Handling Files

• Chapter 6
  Code Modularizing

• Chapter 7
  Error Handling

• Chapter 8
  Introduction to Object-Oriented Programming (OOP)

• Chapter 9
  Introduction to Biopython

Section II 
Advanced Topics

• Chapter 10
  Web Applications

• Chapter 11
  XML

• Chapter 12
  Python and Databases

• Chapter 13
  Regular Expressions

• Chapter 14
  Graphics in Python

Section III
Python Recipes with Commented Source Code

• Chapter 15
  Sequence Manipulation in Batch

• Chapter 16
  Web Application for Filtering Vector Contamination

• Chapter 17
  Searching for PCR Primers Using Primer3

• Chapter 18
  Calculating Melting Temperature from a Set of Primers

• Chapter 19
  Filtering Out Specific Fields from a GenBank File

• Chapter 20
  Inferring Splicing Sites

• Chapter 21
  Web Server for Multiple Alignment

• Chapter 22
  Drawing Marker Positions Using Data Stored in a Database

• Chapter 23
  DNA Mutations with Restrictions

 

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